Get started

New to nf-core? Start here to learn the basics and run your first pipeline.

What is nf-core?

Introduction to the nf-core project and community

Environment setup

Set up your system to run nf-core pipelines

Run your first pipeline

Step-by-step guide to running an nf-core pipeline

Topics

Explore documentation by topic to find what you need.

Running

Run and configure nf-core pipelines

Developing

Create and maintain nf-core pipelines, components, and configs

Contributing

Contribute to the nf-core community

Specifications

Technical specifications for nf-core pipelines, components, and test data

Community

Community resources and guidelines

nf-core/tools

Command-line tools and API for working with nf-core

Additional resources

Learn Nextflow and nf-core through comprehensive documentation and hands-on training materials.

Nextflow documentation

Official Nextflow language documentation and guides

Nextflow and nf-core training

Hands-on training materials and workshops