Single command

The key words “MUST”, “MUST NOT”, “SHOULD”, etc. are to be interpreted as described in RFC 2119.

Every nf-core pipeline repository MUST contain a single pipeline. That is, there MUST be a main.nf file that is the single way to launch a pipeline.

• It is acceptable to have multiple ‘tracks’ within the pipeline, selectable with configuration options.
• It is acceptable to have workflows that use the output of another nf-core pipeline as input.

It MUST be possible to run all parts of the workflow using nextflow run nf-core/<pipeline>, without any specific filename.